Assignments & Instruction documents

Please report any inconsistencies and/or errors you may encounter in this page.

Image Analysis Manuals/Tutorials 2018

Documents for practical part
The SCIL-image manual
The SCIL-image reference manual
The DIP-image reference manual

The Huygens Remote Manager Tutorial
Huygens Essential Reference Manual

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Additional Papers 2018 Course

The papers listed in the table below provide good additional reading for subjects addresses in the lectures. These papers are meant for side reading so as to increase background knowledge.
To be edited for the 2018 course.

Paper subject (title)
3 Book Chapter Sampling
7,8 MW Davidson & M. Abramowitz Optical Microscopy
14 NN Fret Imaging, short introduction
14 A. Jain et al. Review paper data clustering

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Microscopy Facilities at Sylvius Laboratory.

The microscope facilities in the Sylvius Laboratory, also referred to as the Microscopy Unit (Electron Microscopy and Cytological Analysis) will be used to gain experience on image acquisition. At the Sylvius we are hosted by Gerda Lamers (head microscopy, IBL) and she will also give practical guidance with the micrscoscopes. Images are acquired with the confocal microscopes of which there are two available.
You will obtain a time slot reserved for your team. Please be on time. For your convenience find a map of the location of the Sylvius Laboratory on the Leiden university Campus. Wait at the main entrance where we will pick you up to go to the microscope facilities in the building.
If you have questions, or are unexpectedly prevented at the indicated time, contact the course .

The address:
Sylvius Laboratory,
Sylviusweg 72
2333 AL Leiden
Phone: +31 71 527 4700 / 5000

Directions to Sylvius Laboratory

For your convenience follow this link in order to find the location of the Sylvius Laboratory on the Leiden University Campus; It is at walking distance from Leiden Central Station. CLICK HERE FOR DIRECTIONS

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Image Analysis Assignments 2017.

Download these assignments and work on them in your team . (Assingments not yet available, table concept)

Date Posted
Assignment 01 Acquisition 02-04-2018
Zeiss X
Assignment 02 Scalebars & Restauration 21-03-2018
DIP-image X
Assignment 03 3D Images 21-03-2018
Assingment 04 Measurement & Noise 25-04-2018
Assingment 05 Time-Lapse Microscopy 01-05-2018
Assingment 06 Shape and Texture 15-05-2018
Assignment 07 3D-Processing 18-04-2018 DIP-image/Huygens

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Sample Exams from previous years

Exam Part 1
Exam Part 2

Final Report Image Analysis in Microscopy

The report paper is written according to the format given here.
Please submit the file as: iammv2018report_[Name(s)].pdf, in pdf format.
Questions? please contact your asisstant.
Deadline for submission is 21-06-2018, 12.00 hrs.

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