Tutorials, Papers & Documents
Manuals & Tutorials 2023/ Installation Manuals 2023
Documents for practical part
|The SCIL-image manual|
|The SCIL-image reference manual|
|The DIP-image reference manual|
|Using the Matlab/DIPLib environment remote|
|Installing Matlab/DIPLib environment local installation|
|Installing Python/DIPLib environment local installation with MacOS or Ubuntu|
|The Huygens Remote
|Link to Vaa3D for
download Install version (all OS available)
|Instructions for compiled
local install of Vaa3D from the source code
Additional Papers 2023 Course
The papers listed in the table below provide good additional reading for subjects addresses in the lectures.
These papers are meant for side reading so as to increase background knowledge
Paper subject (title)
|7,8||MW Davidson & M. Abramowitz||Optical Microscopy|
|14||NN||Fret Imaging, short introduction|
|14||A. Jain et al.||Review paper data clustering|
To be edited for the 2023 course.
Microscopy Facilities at Sylvius Laboratory.
The microscope facilities in the Sylvius Laboratory, also referred to as the Microscopy Unit will be used to gain experience on image acquisition. At the Sylvius we are hosted by Gerda Lamers (head microscopy, IBL) and she be involved in giving practical guidance with the microscopes. Images are acquired with the confocal microscopes of which there are two available. For each team a time slot will be reserved to acquire your own set of images. Please use the time slot allotted to you and be on time. For your convenience find a map of the location of the Sylvius Laboratory on the Leiden university Campus. Wait at the main entrance where we will pick you up to go to the microscope facilities in the building.
If you have questions, or are unexpectedly prevented at the indicated time, contact the course administration.
2333 AL Leiden
Phone: +31 71 527 4700 / 5000
Sample Exams from previous years
|Exam Part 1|
|Exam Part 2|
The material to study for the for tests (2023) is given in this [FILE].